Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
COL4A4P53420 AP000356.3-201ENST00000382243 753 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 AC010141.1-201ENST00000411585 623 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 RPS9P1-201ENST00000419943 583 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.05■□□□□ 0.16
COL4A4P53420 AC141586.1-203ENST00000567242 366 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 AC005962.1-201ENST00000584100 773 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.05■□□□□ 0.16
COL4A4P53420 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.05■□□□□ 0.16
COL4A4P53420 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL4A4P53420 Z98259.2-201ENST00000641583 609 ntBASIC16.05■□□□□ 0.16
COL4A4P53420 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.04■□□□□ 0.16
COL4A4P53420 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 AC074138.1-201ENST00000611182 1303 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.04■□□□□ 0.16
COL4A4P53420 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A4P53420 AC023024.2-201ENST00000623561 1993 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 MIR1227-201ENST00000408484 88 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.04■□□□□ 0.16
COL4A4P53420 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.04■□□□□ 0.16
COL4A4P53420 MESTP3-201ENST00000503460 968 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 TMCO5B-205ENST00000530020 894 ntBASIC16.04■□□□□ 0.16
COL4A4P53420 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.04■□□□□ 0.16
COL4A4P53420 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.04■□□□□ 0.16
COL4A4P53420 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL4A4P53420 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.04■□□□□ 0.16
COL4A4P53420 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.04■□□□□ 0.16
COL4A4P53420 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL4A4P53420 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 E2F3P2-201ENST00000447755 1422 ntBASIC16.03■□□□□ 0.16
COL4A4P53420 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
COL4A4P53420 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A4P53420 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 TUBB8P8-201ENST00000458717 1058 ntBASIC16.03■□□□□ 0.16
COL4A4P53420 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A4P53420 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.03■□□□□ 0.16
COL4A4P53420 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 AL157813.1-201ENST00000612996 587 ntBASIC16.03■□□□□ 0.16
COL4A4P53420 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.03■□□□□ 0.16
COL4A4P53420 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL4A4P53420 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
COL4A4P53420 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL4A4P53420 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
COL4A4P53420 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL4A4P53420 AC104073.2-201ENST00000453737 312 ntBASIC16.02■□□□□ 0.16
COL4A4P53420 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC16.02■□□□□ 0.16
COL4A4P53420 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A4P53420 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.02■□□□□ 0.16
COL4A4P53420 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
COL4A4P53420 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms