Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.23■□□□□ 0.35
CIITAP33076 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CIITAP33076 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 IGHV3-71-201ENST00000523324 359 ntBASIC17.23■□□□□ 0.35
CIITAP33076 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.23■□□□□ 0.35
CIITAP33076 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.23■□□□□ 0.35
CIITAP33076 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CIITAP33076 MIR6775-201ENST00000617557 69 ntBASIC17.23■□□□□ 0.35
CIITAP33076 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 REXO1L2P-201ENST00000425429 2069 ntBASIC17.23■□□□□ 0.35
CIITAP33076 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 LILRP1-201ENST00000444199 1370 ntBASIC17.23■□□□□ 0.35
CIITAP33076 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CIITAP33076 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CIITAP33076 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CIITAP33076 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CIITAP33076 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
CIITAP33076 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CIITAP33076 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CIITAP33076 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.22■□□□□ 0.35
CIITAP33076 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 C2orf27AP3-201ENST00000434123 579 ntBASIC17.22■□□□□ 0.35
CIITAP33076 ATP5G2P4-201ENST00000442175 420 ntBASIC17.22■□□□□ 0.35
CIITAP33076 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 AC017083.2-201ENST00000608069 979 ntBASIC17.22■□□□□ 0.35
CIITAP33076 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.22■□□□□ 0.35
CIITAP33076 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CIITAP33076 AL354718.3-201ENST00000616414 581 ntBASIC17.22■□□□□ 0.35
CIITAP33076 CR382287.1-201ENST00000623954 586 ntBASIC17.22■□□□□ 0.35
CIITAP33076 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CIITAP33076 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.22■□□□□ 0.35
CIITAP33076 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CIITAP33076 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CIITAP33076 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.21■□□□□ 0.35
CIITAP33076 AL137783.1-201ENST00000623494 1896 ntBASIC17.21■□□□□ 0.35
CIITAP33076 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CIITAP33076 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 AC006001.1-201ENST00000325130 474 ntBASIC17.21■□□□□ 0.35
CIITAP33076 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.21■□□□□ 0.35
CIITAP33076 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CIITAP33076 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.21■□□□□ 0.35
CIITAP33076 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms