Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
COL5A3P25940 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 AC092850.2-201ENST00000623821 2697 ntBASIC18.79■□□□□ 0.6
COL5A3P25940 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL5A3P25940 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.79■□□□□ 0.6
COL5A3P25940 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 MROH4P-201ENST00000431302 1578 ntBASIC18.78■□□□□ 0.6
COL5A3P25940 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
COL5A3P25940 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL5A3P25940 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A3P25940 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 AC026320.2-201ENST00000434379 478 ntBASIC18.78■□□□□ 0.6
COL5A3P25940 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A3P25940 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.78■□□□□ 0.6
COL5A3P25940 AC105137.3-201ENST00000617588 984 ntBASIC18.78■□□□□ 0.6
COL5A3P25940 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.78■□□□□ 0.6
COL5A3P25940 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL5A3P25940 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.78■□□□□ 0.6
COL5A3P25940 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
COL5A3P25940 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL5A3P25940 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC18.77■□□□□ 0.6
COL5A3P25940 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC18.77■□□□□ 0.6
COL5A3P25940 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
COL5A3P25940 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
COL5A3P25940 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.77■□□□□ 0.6
COL5A3P25940 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.77■□□□□ 0.6
COL5A3P25940 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.77■□□□□ 0.6
COL5A3P25940 AHCYP4-201ENST00000419201 1315 ntBASIC18.77■□□□□ 0.6
COL5A3P25940 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.77■□□□□ 0.6
COL5A3P25940 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL5A3P25940 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A3P25940 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
COL5A3P25940 AL807761.2-201ENST00000422849 729 ntBASIC18.77■□□□□ 0.59
COL5A3P25940 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL5A3P25940 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL5A3P25940 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC18.77■□□□□ 0.59
COL5A3P25940 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.77■□□□□ 0.59
COL5A3P25940 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
COL5A3P25940 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.77■□□□□ 0.59
COL5A3P25940 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A3P25940 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.76■□□□□ 0.59
COL5A3P25940 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A3P25940 AC103810.10-201ENST00000606504 343 ntBASIC18.76■□□□□ 0.59
COL5A3P25940 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL5A3P25940 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A3P25940 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.76■□□□□ 0.59
COL5A3P25940 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL5A3P25940 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL5A3P25940 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC18.76■□□□□ 0.59
COL5A3P25940 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 794 ms