Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.28■□□□□ 0.36
CHMP2AO43633 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CHMP2AO43633 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.28■□□□□ 0.36
CHMP2AO43633 AC079776.1-201ENST00000401540 1152 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP2AO43633 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.28■□□□□ 0.36
CHMP2AO43633 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP2AO43633 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 AL355864.2-201ENST00000447420 863 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.28■□□□□ 0.36
CHMP2AO43633 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 SAMD11P1-201ENST00000571429 661 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.28■□□□□ 0.36
CHMP2AO43633 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP2AO43633 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP2AO43633 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP2AO43633 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP2AO43633 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.28■□□□□ 0.36
CHMP2AO43633 AC023024.2-201ENST00000623561 1993 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 AC148477.4-201ENST00000613430 1793 ntBASIC17.28■□□□□ 0.36
CHMP2AO43633 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP2AO43633 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CHMP2AO43633 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP2AO43633 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CHMP2AO43633 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP2AO43633 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.27■□□□□ 0.36
CHMP2AO43633 AC012441.1-201ENST00000446669 685 ntBASIC17.27■□□□□ 0.36
CHMP2AO43633 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.27■□□□□ 0.36
CHMP2AO43633 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.27■□□□□ 0.36
CHMP2AO43633 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CHMP2AO43633 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP2AO43633 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CHMP2AO43633 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.27■□□□□ 0.35
CHMP2AO43633 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CHMP2AO43633 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.27■□□□□ 0.35
CHMP2AO43633 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.27■□□□□ 0.35
CHMP2AO43633 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHMP2AO43633 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHMP2AO43633 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AC093525.8-201ENST00000624099 1342 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AL162727.3-201ENST00000635661 2787 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.26■□□□□ 0.35
CHMP2AO43633 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AC234783.1-201ENST00000441761 496 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 ACA64.2-201ENST00000459014 129 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 AC022137.2-201ENST00000503482 481 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP2AO43633 IGHV3-71-201ENST00000523324 359 ntBASIC17.26■□□□□ 0.35
CHMP2AO43633 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.26■□□□□ 0.35
CHMP2AO43633 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.26■□□□□ 0.35
CHMP2AO43633 AL512343.1-201ENST00000605837 169 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 203.4 ms