Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.06■□□□□ 0.32
VTA1Q9NP79 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VTA1Q9NP79 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.06■□□□□ 0.32
VTA1Q9NP79 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.06■□□□□ 0.32
VTA1Q9NP79 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VTA1Q9NP79 AP005117.1-202ENST00000581724 1908 ntBASIC17.06■□□□□ 0.32
VTA1Q9NP79 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 KRT8P29-201ENST00000420409 1371 ntBASIC17.05■□□□□ 0.32
VTA1Q9NP79 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VTA1Q9NP79 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.05■□□□□ 0.32
VTA1Q9NP79 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AL157414.3-201ENST00000624276 1954 ntBASIC17.04■□□□□ 0.32
VTA1Q9NP79 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC092506.1-202ENST00000401022 528 ntBASIC17.04■□□□□ 0.32
VTA1Q9NP79 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 DEF8-202ENST00000418391 852 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.04■□□□□ 0.32
VTA1Q9NP79 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.04■□□□□ 0.32
VTA1Q9NP79 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 AC138627.1-207ENST00000641560 1006 ntBASIC17.04■□□□□ 0.32
VTA1Q9NP79 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.04■□□□□ 0.32
VTA1Q9NP79 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VTA1Q9NP79 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms