Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 KRT8P4-201ENST00000509735 1454 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AC087481.3-201ENST00000602886 1894 ntBASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 RN7SL713P-201ENST00000582127 302 ntBASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
PAAF1Q9BRP4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PAAF1Q9BRP4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AL606495.2-201ENST00000605867 535 ntBASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 AC138466.3-201ENST00000619983 221 ntBASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
PAAF1Q9BRP4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms