Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
VMP1Q96GC9 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
VMP1Q96GC9 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SLC9A3P3-201ENST00000457608 2229 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC236430.1-201ENST00000402231 743 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 HIST3H2BA-201ENST00000436555 524 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC002472.2-201ENST00000442739 958 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 TERF1P3-201ENST00000505638 1227 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC044860.1-202ENST00000559481 777 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 RN7SL204P-201ENST00000582831 262 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 LINC02560-201ENST00000596379 459 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC008738.7-201ENST00000609744 511 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC008761.3-201ENST00000624803 892 ntBASIC14.84□□□□□ -0.03
VMP1Q96GC9 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
VMP1Q96GC9 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VMP1Q96GC9 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.83□□□□□ -0.03
VMP1Q96GC9 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VMP1Q96GC9 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.83□□□□□ -0.03
VMP1Q96GC9 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AZGP1P1-201ENST00000411909 902 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AC135586.1-201ENST00000539323 574 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 MYO15B-237ENST00000642007 4893 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AL390755.1-201ENST00000623716 2027 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 AC232323.1-201ENST00000540724 2099 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 REXO1L5P-201ENST00000622260 2098 ntBASIC14.83□□□□□ -0.04
VMP1Q96GC9 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VMP1Q96GC9 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.83□□□□□ -0.04
VMP1Q96GC9 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms