Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 AC244452.3-201ENST00000636814 210 ntBASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX2-3Q8TAU0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RPL5P21-201ENST00000404620 815 ntBASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC016694.1-201ENST00000434179 700 ntBASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC004466.1-201ENST00000599515 1080 ntBASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 AC009542.2-202ENST00000619004 1067 ntBASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 PRSS30P-206ENST00000641773 873 ntBASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX2-3Q8TAU0 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.08■□□□□ 0.49
NKX2-3Q8TAU0 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 AC244669.2-201ENST00000612320 853 ntBASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 AL021578.1-201ENST00000613646 709 ntBASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 SNX1-214ENST00000625244 324 ntTSL 5 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 RHOXF1P1-202ENST00000635473 501 ntBASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 AL645728.2-202ENST00000641679 227 ntBASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 MROH4P-201ENST00000431302 1578 ntBASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX2-3Q8TAU0 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
NKX2-3Q8TAU0 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms