Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FAM8A3P-201ENST00000427218 844 ntBASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 AP001442.1-203ENST00000596385 876 ntTSL 5 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 AC073439.1-201ENST00000624121 1774 ntBASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
DEPDC4Q8N2C3 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
DEPDC4Q8N2C3 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC099522.2-201ENST00000607001 744 ntBASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC087386.2-201ENST00000623212 4637 ntBASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
DEPDC4Q8N2C3 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 AC079140.1-201ENST00000508039 487 ntBASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 KRT8P23-201ENST00000560090 1207 ntBASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.44□□□□□ -0.1
DEPDC4Q8N2C3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms