Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 AC106881.1-201ENST00000605849 3329 ntBASIC13.6□□□□□ -0.23
CX3CR1P49238 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.6□□□□□ -0.23
CX3CR1P49238 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.6□□□□□ -0.23
CX3CR1P49238 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CX3CR1P49238 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 AC015922.1-201ENST00000421102 1152 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.59□□□□□ -0.23
CX3CR1P49238 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.59□□□□□ -0.23
CX3CR1P49238 AL512361.1-201ENST00000554200 418 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 AC025678.2-201ENST00000562061 970 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
CX3CR1P49238 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 AL691403.2-201ENST00000618460 490 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 AC073592.8-201ENST00000624126 511 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 LINC00528-201ENST00000600723 2160 ntBASIC13.59□□□□□ -0.23
CX3CR1P49238 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.59□□□□□ -0.23
CX3CR1P49238 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CX3CR1P49238 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CX3CR1P49238 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.59□□□□□ -0.23
CX3CR1P49238 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 WASH3P-207ENST00000560956 1394 ntBASIC13.58□□□□□ -0.23
CX3CR1P49238 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 MROH4P-201ENST00000431302 1578 ntBASIC13.58□□□□□ -0.23
CX3CR1P49238 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CX3CR1P49238 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CR1P49238 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CR1P49238 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.24
CX3CR1P49238 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.58□□□□□ -0.24
CX3CR1P49238 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CX3CR1P49238 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CX3CR1P49238 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CR1P49238 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CR1P49238 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.58□□□□□ -0.24
CX3CR1P49238 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.58□□□□□ -0.24
CX3CR1P49238 KLF2P3-201ENST00000451977 1087 ntBASIC13.58□□□□□ -0.24
CX3CR1P49238 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.58□□□□□ -0.24
CX3CR1P49238 AC069120.2-201ENST00000524091 540 ntBASIC13.58□□□□□ -0.24
CX3CR1P49238 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CR1P49238 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.58□□□□□ -0.24
CX3CR1P49238 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CX3CR1P49238 AC051619.7-201ENST00000568314 623 ntBASIC13.58□□□□□ -0.24
CX3CR1P49238 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms