Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 AC079328.2-201ENST00000561241 3354 ntBASIC15.13■□□□□ 0.01
CXCL12P48061 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.13■□□□□ 0.01
CXCL12P48061 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CXCL12P48061 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.13■□□□□ 0.01
CXCL12P48061 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.13■□□□□ 0.01
CXCL12P48061 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.13■□□□□ 0.01
CXCL12P48061 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.13■□□□□ 0.01
CXCL12P48061 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 AC009779.1-201ENST00000551138 283 ntBASIC15.13■□□□□ 0.01
CXCL12P48061 MIR4754-201ENST00000582477 89 ntBASIC15.13■□□□□ 0.01
CXCL12P48061 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.13■□□□□ 0.01
CXCL12P48061 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 AC008805.1-201ENST00000590892 364 ntBASIC15.13■□□□□ 0.01
CXCL12P48061 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CXCL12P48061 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CXCL12P48061 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CXCL12P48061 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.13■□□□□ 0.01
CXCL12P48061 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC15.13■□□□□ 0.01
CXCL12P48061 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
CXCL12P48061 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL12P48061 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 E2F3P2-201ENST00000447755 1422 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL12P48061 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 AL627231.1-201ENST00000394467 1125 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 RPL5P21-201ENST00000404620 815 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 RPSAP31-201ENST00000416648 895 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC012441.2-201ENST00000444843 739 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC073150.1-201ENST00000450406 1084 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.12■□□□□ 0.01
CXCL12P48061 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 AC135983.4-201ENST00000564116 1262 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.12■□□□□ 0.01
CXCL12P48061 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 AC103810.10-201ENST00000606504 343 ntBASIC15.12■□□□□ 0.01
CXCL12P48061 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.12■□□□□ 0.01
CXCL12P48061 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CXCL12P48061 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CXCL12P48061 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.12■□□□□ 0.01
CXCL12P48061 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms