Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMARCA1P28370 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SMARCA1P28370 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SMARCA1P28370 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC022210.1-201ENST00000449856 793 ntBASIC17.54■□□□□ 0.4
SMARCA1P28370 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.54■□□□□ 0.4
SMARCA1P28370 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC079316.1-201ENST00000548397 411 ntBASIC17.54■□□□□ 0.4
SMARCA1P28370 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 AC244669.2-201ENST00000612320 853 ntBASIC17.54■□□□□ 0.4
SMARCA1P28370 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.54■□□□□ 0.4
SMARCA1P28370 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMARCA1P28370 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
SMARCA1P28370 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SMARCA1P28370 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMARCA1P28370 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.53■□□□□ 0.4
SMARCA1P28370 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.53■□□□□ 0.4
SMARCA1P28370 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 KLF2P4-201ENST00000451959 1225 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 AC026434.2-201ENST00000506094 1078 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.53■□□□□ 0.4
SMARCA1P28370 HILS1-202ENST00000545329 423 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 AC017083.2-201ENST00000608069 979 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.53■□□□□ 0.4
SMARCA1P28370 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 RHOXF1P1-202ENST00000635473 501 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 AC006453.4-201ENST00000636949 1252 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.53■□□□□ 0.4
SMARCA1P28370 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.53■□□□□ 0.4
SMARCA1P28370 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 AL359258.3-201ENST00000622910 2331 ntBASIC17.53■□□□□ 0.4
SMARCA1P28370 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMARCA1P28370 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.52■□□□□ 0.4
SMARCA1P28370 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.52■□□□□ 0.4
SMARCA1P28370 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SMARCA1P28370 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SMARCA1P28370 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.52■□□□□ 0.4
SMARCA1P28370 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMARCA1P28370 FO681548.1-201ENST00000455617 1132 ntBASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms