Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 AC099063.4-201ENST00000641099 1602 ntBASIC16.79■□□□□ 0.28
RFX1P22670 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.79■□□□□ 0.28
RFX1P22670 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.79■□□□□ 0.28
RFX1P22670 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 AC007389.4-201ENST00000454674 793 ntBASIC16.79■□□□□ 0.28
RFX1P22670 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.79■□□□□ 0.28
RFX1P22670 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.79■□□□□ 0.28
RFX1P22670 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 AC123567.1-201ENST00000548294 1261 ntBASIC16.79■□□□□ 0.28
RFX1P22670 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 COX11-210ENST00000639671 696 ntBASIC16.79■□□□□ 0.28
RFX1P22670 AL033527.4-201ENST00000641026 673 ntBASIC16.79■□□□□ 0.28
RFX1P22670 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.79■□□□□ 0.28
RFX1P22670 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
RFX1P22670 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.79■□□□□ 0.28
RFX1P22670 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RFX1P22670 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 FAM86MP-201ENST00000340703 885 ntBASIC16.78■□□□□ 0.28
RFX1P22670 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 REXO1L6P-201ENST00000603433 1515 ntBASIC16.78■□□□□ 0.28
RFX1P22670 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
RFX1P22670 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.78■□□□□ 0.28
RFX1P22670 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 ZBED1P1-201ENST00000502364 1930 ntBASIC16.78■□□□□ 0.28
RFX1P22670 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
RFX1P22670 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RFX1P22670 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.78■□□□□ 0.28
RFX1P22670 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms