Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
MSH3P20585 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MSH3P20585 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MSH3P20585 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.36■□□□□ 0.05
MSH3P20585 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.36■□□□□ 0.05
MSH3P20585 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.36■□□□□ 0.05
MSH3P20585 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.36■□□□□ 0.05
MSH3P20585 TP53TG3HP-202ENST00000569755 579 ntBASIC15.36■□□□□ 0.05
MSH3P20585 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.36■□□□□ 0.05
MSH3P20585 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.36■□□□□ 0.05
MSH3P20585 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.36■□□□□ 0.05
MSH3P20585 AL662799.1-202ENST00000614205 422 ntBASIC15.36■□□□□ 0.05
MSH3P20585 MIR8072-201ENST00000614241 80 ntBASIC15.36■□□□□ 0.05
MSH3P20585 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
MSH3P20585 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MSH3P20585 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.36■□□□□ 0.05
MSH3P20585 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MSH3P20585 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSH3P20585 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
MSH3P20585 AC112693.3-201ENST00000624819 1983 ntBASIC15.35■□□□□ 0.05
MSH3P20585 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MSH3P20585 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC15.35■□□□□ 0.05
MSH3P20585 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.35■□□□□ 0.05
MSH3P20585 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.35■□□□□ 0.05
MSH3P20585 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MSH3P20585 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MSH3P20585 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms