Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A1P12109 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.79■□□□□ 0.28
COL6A1P12109 VDAC1P1-201ENST00000439229 848 ntBASIC16.79■□□□□ 0.28
COL6A1P12109 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A1P12109 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 DUX4L47-201ENST00000566374 394 ntBASIC16.79■□□□□ 0.28
COL6A1P12109 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A1P12109 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL6A1P12109 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A1P12109 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.79■□□□□ 0.28
COL6A1P12109 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.79■□□□□ 0.28
COL6A1P12109 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
COL6A1P12109 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL6A1P12109 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL6A1P12109 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL6A1P12109 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 RPL7P35-201ENST00000446943 740 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 DUX4L46-201ENST00000566845 751 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 SAMD11P1-201ENST00000571429 661 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 MIR4649-201ENST00000582839 64 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 AC005357.2-202ENST00000590507 1060 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.78■□□□□ 0.28
COL6A1P12109 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.78■□□□□ 0.28
COL6A1P12109 AC242376.2-201ENST00000619355 883 ntBASIC16.78■□□□□ 0.28
COL6A1P12109 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
COL6A1P12109 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.78■□□□□ 0.28
COL6A1P12109 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL6A1P12109 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.78■□□□□ 0.28
COL6A1P12109 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 AC074138.1-201ENST00000611182 1303 ntBASIC16.77■□□□□ 0.28
COL6A1P12109 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A1P12109 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
COL6A1P12109 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC16.77■□□□□ 0.28
COL6A1P12109 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 RN7SKP175-201ENST00000408472 289 ntBASIC16.77■□□□□ 0.28
COL6A1P12109 AC010141.1-201ENST00000411585 623 ntBASIC16.77■□□□□ 0.28
COL6A1P12109 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL6A1P12109 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A1P12109 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A1P12109 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A1P12109 AC141586.1-203ENST00000567242 366 ntBASIC16.77■□□□□ 0.28
COL6A1P12109 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.77■□□□□ 0.28
COL6A1P12109 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.77■□□□□ 0.28
COL6A1P12109 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.77■□□□□ 0.28
COL6A1P12109 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms