Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB1P09429 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGB1P09429 AL360270.3-201ENST00000609118 1348 ntBASIC18.16■□□□□ 0.5
HMGB1P09429 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB1P09429 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGB1P09429 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGB1P09429 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 VDAC1P7-201ENST00000462417 847 ntBASIC18.15■□□□□ 0.5
HMGB1P09429 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGB1P09429 AC093726.1-201ENST00000608064 963 ntBASIC18.15■□□□□ 0.5
HMGB1P09429 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 FGD5P1-202ENST00000614866 2498 ntBASIC18.15■□□□□ 0.5
HMGB1P09429 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGB1P09429 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HMGB1P09429 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
HMGB1P09429 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGB1P09429 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.5
HMGB1P09429 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 AC099063.4-201ENST00000641099 1602 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB1P09429 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 NUS1P3-201ENST00000423502 862 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 AL442647.2-201ENST00000429864 857 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.14■□□□□ 0.49
HMGB1P09429 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 TSPY16P-201ENST00000449843 468 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 SERBP1P5-201ENST00000510079 1181 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGB1P09429 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.14■□□□□ 0.49
HMGB1P09429 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGB1P09429 AL096865.1-201ENST00000606796 927 ntBASIC18.14■□□□□ 0.49
HMGB1P09429 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGB1P09429 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
HMGB1P09429 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms