Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 AC067750.1-201ENST00000608826 6545 ntBASIC14.99□□□□□ -0.01
LDLRP01130 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.99□□□□□ -0.01
LDLRP01130 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.99□□□□□ -0.01
LDLRP01130 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
LDLRP01130 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.99□□□□□ -0.01
LDLRP01130 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
LDLRP01130 MIR4453-201ENST00000584019 89 ntBASIC14.99□□□□□ -0.01
LDLRP01130 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
LDLRP01130 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.99□□□□□ -0.01
LDLRP01130 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.99□□□□□ -0.01
LDLRP01130 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDLRP01130 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.99□□□□□ -0.01
LDLRP01130 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LDLRP01130 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 AC009090.5-201ENST00000624886 2285 ntBASIC14.98□□□□□ -0.01
LDLRP01130 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
LDLRP01130 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.98□□□□□ -0.01
LDLRP01130 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.98□□□□□ -0.01
LDLRP01130 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LDLRP01130 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LDLRP01130 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LDLRP01130 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
LDLRP01130 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LDLRP01130 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LDLRP01130 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.97□□□□□ -0.01
LDLRP01130 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.97□□□□□ -0.01
LDLRP01130 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
LDLRP01130 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.97□□□□□ -0.01
LDLRP01130 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LDLRP01130 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LDLRP01130 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.97□□□□□ -0.01
LDLRP01130 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms