Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 AC007541.1-201ENST00000570282 1469 ntBASIC16.74■□□□□ 0.27
RNF40O75150 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 AC117489.1-201ENST00000625169 3217 ntBASIC16.74■□□□□ 0.27
RNF40O75150 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 CU639417.3-201ENST00000624240 1404 ntBASIC16.74■□□□□ 0.27
RNF40O75150 AL137784.3-201ENST00000623858 2288 ntBASIC16.74■□□□□ 0.27
RNF40O75150 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.74■□□□□ 0.27
RNF40O75150 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.74■□□□□ 0.27
RNF40O75150 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC16.74■□□□□ 0.27
RNF40O75150 AC105021.1-202ENST00000570572 669 ntBASIC16.74■□□□□ 0.27
RNF40O75150 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.74■□□□□ 0.27
RNF40O75150 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.74■□□□□ 0.27
RNF40O75150 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.74■□□□□ 0.27
RNF40O75150 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 UBE2Q2P6-202ENST00000617217 443 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF40O75150 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.74■□□□□ 0.27
RNF40O75150 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
RNF40O75150 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 AGAP7P-201ENST00000582299 2062 ntBASIC16.74■□□□□ 0.27
RNF40O75150 AGAP14-201ENST00000624701 2060 ntBASIC16.74■□□□□ 0.27
RNF40O75150 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.74■□□□□ 0.27
RNF40O75150 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF40O75150 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF40O75150 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
RNF40O75150 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RNF40O75150 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 AC098859.1-201ENST00000502915 1238 ntBASIC16.73■□□□□ 0.27
RNF40O75150 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.73■□□□□ 0.27
RNF40O75150 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF40O75150 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RNF40O75150 BANF1P1-201ENST00000553684 263 ntBASIC16.73■□□□□ 0.27
RNF40O75150 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 TP53TG3HP-202ENST00000569755 579 ntBASIC16.73■□□□□ 0.27
RNF40O75150 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RNF40O75150 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 AL359881.2-201ENST00000602973 570 ntBASIC16.73■□□□□ 0.27
RNF40O75150 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RNF40O75150 AC004840.1-201ENST00000636359 365 ntBASIC16.73■□□□□ 0.27
RNF40O75150 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF40O75150 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF40O75150 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.73■□□□□ 0.27
RNF40O75150 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms