Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXN3O00409 DRD5P1-201ENST00000456605 1438 ntBASIC16.48■□□□□ 0.23
FOXN3O00409 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
FOXN3O00409 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
FOXN3O00409 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 FAM86LP-201ENST00000478302 853 ntBASIC16.48■□□□□ 0.23
FOXN3O00409 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.48■□□□□ 0.23
FOXN3O00409 TPRX2P-201ENST00000535362 881 ntBASIC16.48■□□□□ 0.23
FOXN3O00409 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.48■□□□□ 0.23
FOXN3O00409 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
FOXN3O00409 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXN3O00409 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.48■□□□□ 0.23
FOXN3O00409 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 CICP14-201ENST00000629111 2732 ntBASIC16.48■□□□□ 0.23
FOXN3O00409 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXN3O00409 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
FOXN3O00409 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXN3O00409 AC068587.6-202ENST00000641839 5619 ntBASIC16.48■□□□□ 0.23
FOXN3O00409 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
FOXN3O00409 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
FOXN3O00409 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 AC067930.6-201ENST00000623257 4947 ntBASIC16.47■□□□□ 0.23
FOXN3O00409 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
FOXN3O00409 AL662799.1-202ENST00000614205 422 ntBASIC16.47■□□□□ 0.23
FOXN3O00409 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
FOXN3O00409 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
FOXN3O00409 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
FOXN3O00409 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
FOXN3O00409 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXN3O00409 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXN3O00409 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
FOXN3O00409 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.46■□□□□ 0.23
FOXN3O00409 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.46■□□□□ 0.23
FOXN3O00409 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.46■□□□□ 0.23
FOXN3O00409 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
FOXN3O00409 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms