Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.77□□□□□ -0.04
PDLIM1O00151 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.77□□□□□ -0.04
PDLIM1O00151 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PDLIM1O00151 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.77□□□□□ -0.05
PDLIM1O00151 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.77□□□□□ -0.05
PDLIM1O00151 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.77□□□□□ -0.05
PDLIM1O00151 MKNK2P1-201ENST00000437526 628 ntBASIC14.77□□□□□ -0.05
PDLIM1O00151 AC112482.1-201ENST00000492080 688 ntBASIC14.77□□□□□ -0.05
PDLIM1O00151 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.77□□□□□ -0.05
PDLIM1O00151 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.77□□□□□ -0.05
PDLIM1O00151 YBX1P5-201ENST00000509441 847 ntBASIC14.77□□□□□ -0.05
PDLIM1O00151 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.77□□□□□ -0.05
PDLIM1O00151 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC14.77□□□□□ -0.05
PDLIM1O00151 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.77□□□□□ -0.05
PDLIM1O00151 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.77□□□□□ -0.05
PDLIM1O00151 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.77□□□□□ -0.05
PDLIM1O00151 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.77□□□□□ -0.05
PDLIM1O00151 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
PDLIM1O00151 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.77□□□□□ -0.05
PDLIM1O00151 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.77□□□□□ -0.05
PDLIM1O00151 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PDLIM1O00151 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 AC097376.2-205ENST00000610159 5334 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 AC097359.2-201ENST00000604992 2389 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 CICP11-201ENST00000434745 2827 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PDLIM1O00151 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.76□□□□□ -0.05
PDLIM1O00151 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.76□□□□□ -0.05
PDLIM1O00151 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 MIR3909-201ENST00000579518 119 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 AC010327.4-202ENST00000591484 748 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.76□□□□□ -0.05
PDLIM1O00151 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 BX640514.1-201ENST00000583223 1918 ntBASIC14.76□□□□□ -0.05
PDLIM1O00151 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PDLIM1O00151 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PDLIM1O00151 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PDLIM1O00151 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PDLIM1O00151 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.75□□□□□ -0.05
PDLIM1O00151 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PDLIM1O00151 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PDLIM1O00151 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PDLIM1O00151 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
PDLIM1O00151 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.75□□□□□ -0.05
PDLIM1O00151 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PDLIM1O00151 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms