Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
SHROOM4Q9ULL8 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 DPM3-202ENST00000368399 517 ntBASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 CENPX-208ENST00000584347 799 ntTSL 2 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 PRSS30P-206ENST00000641773 873 ntBASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 PDIA3P2-201ENST00000428073 158 ntBASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 AL023803.2-201ENST00000620080 638 ntBASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM4Q9ULL8 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AC234644.1-201ENST00000406065 370 ntBASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 RPL13AP19-201ENST00000434320 584 ntBASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AL353637.1-201ENST00000451571 732 ntBASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 CTBP2P4-201ENST00000513884 920 ntBASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 CSH2-206ENST00000560142 749 ntTSL 5 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AL359258.3-201ENST00000622910 2331 ntBASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM4Q9ULL8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 AC026691.1-201ENST00000602502 2017 ntBASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 HIST2H2BB-201ENST00000449108 381 ntBASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM4Q9ULL8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
SHROOM4Q9ULL8 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.21
SHROOM4Q9ULL8 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC28.89■■■□□ 2.21
SHROOM4Q9ULL8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.21
SHROOM4Q9ULL8 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 DOC2GP-204ENST00000639052 2548 ntBASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 AC026316.1-201ENST00000398900 414 ntBASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 Z97180.1-201ENST00000445173 988 ntBASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 AC006335.1-201ENST00000445200 547 ntBASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 WT1-AS_6.1-201ENST00000614919 121 ntBASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms