Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 AL035456.1-201ENST00000456064 1369 ntBASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 BANF1P1-201ENST00000553684 263 ntBASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC39Q9UFE4 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 RN7SL828P-201ENST00000607615 303 ntBASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AL596442.2-201ENST00000610240 980 ntBASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 MIR6080-201ENST00000617359 66 ntBASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC39Q9UFE4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 MIR4313-201ENST00000580760 101 ntBASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 AC079781.4-201ENST00000641908 219 ntBASIC17.91■□□□□ 0.46
CCDC39Q9UFE4 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms