Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AL161772.1-201ENST00000610494 4412 ntBASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC022532.1-201ENST00000624563 1728 ntBASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SOCS2P1-201ENST00000417727 557 ntBASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 CR383656.12-201ENST00000549567 513 ntBASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC063926.2-201ENST00000623766 1308 ntBASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
PTCHD1Q96NR3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 PCDHA3-202ENST00000532566 4594 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AL162726.2-201ENST00000438986 1017 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 GAPDHP21-201ENST00000450301 1010 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AC026410.3-201ENST00000514280 936 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AC107373.2-201ENST00000607735 490 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 CU634019.7-201ENST00000624153 1185 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 FP236241.2-201ENST00000624906 1185 ntBASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.55□□□□□ -0.08
PTCHD1Q96NR3 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms