Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 MYCLP2-201ENST00000449268 967 ntBASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 WASH3P-207ENST00000560956 1394 ntBASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 KRT223P-202ENST00000449164 1292 ntBASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 AC106881.1-201ENST00000605849 3329 ntBASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 REXO1L6P-201ENST00000603433 1515 ntBASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHROOM3Q8TF72 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
SHROOM3Q8TF72 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.64■□□□□ 0.1
SHROOM3Q8TF72 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.1
SHROOM3Q8TF72 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 TMEM14DP-201ENST00000422205 345 ntBASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 AC005252.2-201ENST00000624630 1141 ntBASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHROOM3Q8TF72 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms