Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MYCLP2-201ENST00000449268 967 ntBASIC18.61■□□□□ 0.57
VPS53Q5VIR6 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 RRP7BP-205ENST00000566851 833 ntBASIC18.61■□□□□ 0.57
VPS53Q5VIR6 AC093726.1-201ENST00000608064 963 ntBASIC18.61■□□□□ 0.57
VPS53Q5VIR6 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS53Q5VIR6 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AL391825.1-201ENST00000457671 1364 ntBASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AP005018.1-201ENST00000525475 301 ntBASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AC140912.1-201ENST00000577171 1054 ntBASIC18.6■□□□□ 0.57
VPS53Q5VIR6 BRI3BPP1-201ENST00000594224 787 ntBASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 AC148477.4-201ENST00000613430 1793 ntBASIC18.6■□□□□ 0.57
VPS53Q5VIR6 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS53Q5VIR6 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 AC023024.2-201ENST00000623561 1993 ntBASIC18.59■□□□□ 0.57
VPS53Q5VIR6 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS53Q5VIR6 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 217.2 ms