Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CDH11P55287 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH11P55287 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH11P55287 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH11P55287 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.22□□□□□ -0.13
CDH11P55287 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH11P55287 AC073389.1-201ENST00000595595 795 ntBASIC14.22□□□□□ -0.13
CDH11P55287 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.22□□□□□ -0.13
CDH11P55287 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH11P55287 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.22□□□□□ -0.13
CDH11P55287 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CDH11P55287 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.22□□□□□ -0.13
CDH11P55287 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CDH11P55287 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.21□□□□□ -0.13
CDH11P55287 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 RARRES2P9-201ENST00000565168 469 ntBASIC14.21□□□□□ -0.13
CDH11P55287 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 MIR4745-201ENST00000577608 62 ntBASIC14.21□□□□□ -0.13
CDH11P55287 MIR4453-201ENST00000584019 89 ntBASIC14.21□□□□□ -0.13
CDH11P55287 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.21□□□□□ -0.13
CDH11P55287 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.21□□□□□ -0.13
CDH11P55287 AL450472.2-201ENST00000603663 1156 ntBASIC14.21□□□□□ -0.13
CDH11P55287 AL158211.3-201ENST00000607385 239 ntBASIC14.21□□□□□ -0.13
CDH11P55287 AC003101.2-201ENST00000612557 442 ntBASIC14.21□□□□□ -0.13
CDH11P55287 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 AJ011932.1-201ENST00000621707 465 ntBASIC14.21□□□□□ -0.13
CDH11P55287 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.21□□□□□ -0.13
CDH11P55287 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CDH11P55287 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDH11P55287 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CDH11P55287 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CDH11P55287 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CDH11P55287 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.2□□□□□ -0.14
CDH11P55287 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
CDH11P55287 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CDH11P55287 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CDH11P55287 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CDH11P55287 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms