Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 AC024267.1-201ENST00000582320 895 ntBASIC12.71□□□□□ -0.37
CDX1P47902 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.71□□□□□ -0.37
CDX1P47902 AC011467.4-201ENST00000594891 528 ntBASIC12.71□□□□□ -0.37
CDX1P47902 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CDX1P47902 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 AC020658.6-201ENST00000623564 1870 ntBASIC12.71□□□□□ -0.37
CDX1P47902 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDX1P47902 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CDX1P47902 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 FOXO1B-201ENST00000504678 1527 ntBASIC12.71□□□□□ -0.38
CDX1P47902 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
CDX1P47902 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
CDX1P47902 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.71□□□□□ -0.38
CDX1P47902 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.71□□□□□ -0.38
CDX1P47902 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
CDX1P47902 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.71□□□□□ -0.38
CDX1P47902 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CDX1P47902 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.38
CDX1P47902 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDX1P47902 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.7□□□□□ -0.38
CDX1P47902 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.7□□□□□ -0.38
CDX1P47902 AC069120.2-201ENST00000524091 540 ntBASIC12.7□□□□□ -0.38
CDX1P47902 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.7□□□□□ -0.38
CDX1P47902 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CDX1P47902 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CDX1P47902 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.7□□□□□ -0.38
CDX1P47902 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CDX1P47902 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 PCGF3-213ENST00000620529 1899 ntBASIC12.7□□□□□ -0.38
CDX1P47902 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.7□□□□□ -0.38
CDX1P47902 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDX1P47902 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CDX1P47902 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CDX1P47902 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CDX1P47902 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.69□□□□□ -0.38
CDX1P47902 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
CDX1P47902 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDX1P47902 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms