Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.52■□□□□ 0.23
SSR1P43307 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.52■□□□□ 0.23
SSR1P43307 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSR1P43307 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSR1P43307 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.51■□□□□ 0.23
SSR1P43307 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 AC006058.4-201ENST00000624016 1670 ntBASIC16.51■□□□□ 0.23
SSR1P43307 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
SSR1P43307 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.51■□□□□ 0.23
SSR1P43307 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.51■□□□□ 0.23
SSR1P43307 AL645939.2-201ENST00000427340 991 ntBASIC16.51■□□□□ 0.23
SSR1P43307 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.51■□□□□ 0.23
SSR1P43307 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.51■□□□□ 0.23
SSR1P43307 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.51■□□□□ 0.23
SSR1P43307 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 AC148477.4-201ENST00000613430 1793 ntBASIC16.51■□□□□ 0.23
SSR1P43307 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.51■□□□□ 0.23
SSR1P43307 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.51■□□□□ 0.23
SSR1P43307 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSR1P43307 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
SSR1P43307 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 KRT18P13-201ENST00000400056 1290 ntBASIC16.5■□□□□ 0.23
SSR1P43307 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.5■□□□□ 0.23
SSR1P43307 AC004967.1-201ENST00000453589 447 ntBASIC16.5■□□□□ 0.23
SSR1P43307 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.5■□□□□ 0.23
SSR1P43307 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.5■□□□□ 0.23
SSR1P43307 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.5■□□□□ 0.23
SSR1P43307 AL133215.2-201ENST00000609242 977 ntBASIC16.5■□□□□ 0.23
SSR1P43307 AP001059.3-201ENST00000619053 235 ntBASIC16.5■□□□□ 0.23
SSR1P43307 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SSR1P43307 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 AC007686.3-201ENST00000619017 3487 ntBASIC16.5■□□□□ 0.23
SSR1P43307 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSR1P43307 CTBP1-AS2-206ENST00000581398 5652 ntBASIC16.5■□□□□ 0.23
SSR1P43307 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.5■□□□□ 0.23
SSR1P43307 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.49■□□□□ 0.23
SSR1P43307 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SSR1P43307 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.49■□□□□ 0.23
SSR1P43307 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.49■□□□□ 0.23
SSR1P43307 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SSR1P43307 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SSR1P43307 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SSR1P43307 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms