Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18■□□□□ 0.47
COL4A5P29400 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18■□□□□ 0.47
COL4A5P29400 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 KRT8P31-201ENST00000504812 1408 ntBASIC18■□□□□ 0.47
COL4A5P29400 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 AP003680.1-201ENST00000598970 3660 ntBASIC18■□□□□ 0.47
COL4A5P29400 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 PCDHB19P-201ENST00000570871 2371 ntBASIC18■□□□□ 0.47
COL4A5P29400 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
COL4A5P29400 AL627422.1-201ENST00000434104 580 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC018463.1-201ENST00000456674 917 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 POLD4-208ENST00000532830 904 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC009884.2-201ENST00000603110 324 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC092299.1-201ENST00000632679 757 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
COL4A5P29400 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 AC105250.1-201ENST00000509378 2057 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC17.99■□□□□ 0.47
COL4A5P29400 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL4A5P29400 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 PPOX-204ENST00000462866 473 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 NEU3-207ENST00000534628 746 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC17.99■□□□□ 0.47
COL4A5P29400 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC17.99■□□□□ 0.47
COL4A5P29400 AC107464.3-201ENST00000609172 737 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 AL132780.4-201ENST00000624870 1135 ntBASIC17.99■□□□□ 0.47
COL4A5P29400 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.98■□□□□ 0.47
COL4A5P29400 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A5P29400 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC17.98■□□□□ 0.47
COL4A5P29400 ORAOV1P1-201ENST00000503108 395 ntBASIC17.98■□□□□ 0.47
COL4A5P29400 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL4A5P29400 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 AC027237.1-201ENST00000560942 655 ntBASIC17.98■□□□□ 0.47
COL4A5P29400 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC17.98■□□□□ 0.47
COL4A5P29400 MIR5196-201ENST00000578146 115 ntBASIC17.98■□□□□ 0.47
COL4A5P29400 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
COL4A5P29400 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.98■□□□□ 0.47
COL4A5P29400 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.98■□□□□ 0.47
COL4A5P29400 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 AC023090.2-201ENST00000625182 2110 ntBASIC17.98■□□□□ 0.47
COL4A5P29400 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL4A5P29400 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL4A5P29400 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A5P29400 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
COL4A5P29400 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A5P29400 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A5P29400 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL4A5P29400 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms