Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NPHP4O75161 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP4O75161 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP4O75161 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP4O75161 RPS23-204ENST00000507980 836 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP4O75161 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC21.08■□□□□ 0.97
NPHP4O75161 FAM86B3P-203ENST00000523992 854 ntBASIC21.08■□□□□ 0.97
NPHP4O75161 AC055811.3-201ENST00000584952 686 ntBASIC21.08■□□□□ 0.97
NPHP4O75161 PEBP1P2-201ENST00000603980 558 ntBASIC21.08■□□□□ 0.97
NPHP4O75161 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC21.08■□□□□ 0.97
NPHP4O75161 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC21.08■□□□□ 0.97
NPHP4O75161 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP4O75161 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
NPHP4O75161 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP4O75161 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC21.08■□□□□ 0.96
NPHP4O75161 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP4O75161 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP4O75161 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NPHP4O75161 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPHP4O75161 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
NPHP4O75161 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.07■□□□□ 0.96
NPHP4O75161 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
NPHP4O75161 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
NPHP4O75161 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 GUSBP10-201ENST00000417412 665 ntBASIC21.07■□□□□ 0.96
NPHP4O75161 AC244197.1-201ENST00000456494 951 ntBASIC21.07■□□□□ 0.96
NPHP4O75161 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP4O75161 PGAM1P12-201ENST00000505622 748 ntBASIC21.07■□□□□ 0.96
NPHP4O75161 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP4O75161 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC21.07■□□□□ 0.96
NPHP4O75161 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC21.07■□□□□ 0.96
NPHP4O75161 THY1-209ENST00000580275 578 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP4O75161 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP4O75161 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
NPHP4O75161 MARK2P16-201ENST00000605714 1723 ntBASIC21.07■□□□□ 0.96
NPHP4O75161 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP4O75161 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP4O75161 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP4O75161 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NPHP4O75161 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP4O75161 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP4O75161 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP4O75161 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP4O75161 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC21.06■□□□□ 0.96
NPHP4O75161 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC21.06■□□□□ 0.96
NPHP4O75161 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC21.06■□□□□ 0.96
NPHP4O75161 AC027601.3-201ENST00000622907 509 ntBASIC21.06■□□□□ 0.96
NPHP4O75161 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
NPHP4O75161 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NPHP4O75161 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC21.06■□□□□ 0.96
NPHP4O75161 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
NPHP4O75161 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NPHP4O75161 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 TNRC18P3-201ENST00000441896 2691 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NPHP4O75161 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
NPHP4O75161 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC21.05■□□□□ 0.96
NPHP4O75161 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
NPHP4O75161 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NPHP4O75161 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP4O75161 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A21P-201ENST00000510875 1396 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A15P-201ENST00000514465 1395 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A6P-201ENST00000515148 1394 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A16P-201ENST00000526662 1395 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A9P-201ENST00000527940 1395 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A5P-201ENST00000528738 1395 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A14P-201ENST00000530386 1395 ntBASIC21.05■□□□□ 0.96
NPHP4O75161 FAM90A13P-201ENST00000534703 1395 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms