Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 FDX1P1-201ENST00000449115 551 ntBASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 AC040169.1-201ENST00000565382 521 ntBASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 AC018529.1-201ENST00000613063 361 ntBASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 BX640514.1-201ENST00000583223 1918 ntBASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TRIM49D1C9J1S8 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AC018529.2-202ENST00000611482 3087 ntBASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 MIR940-201ENST00000401276 94 ntBASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AC005237.2-201ENST00000434368 219 ntBASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TRIM49D1C9J1S8 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AC074338.1-201ENST00000416825 156 ntBASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 HTR5BP-201ENST00000430851 1154 ntBASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AL133215.2-201ENST00000609242 977 ntBASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 AC003101.2-201ENST00000612557 442 ntBASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.49■□□□□ 0.07
TRIM49D1C9J1S8 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms