Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC044860.1-202ENST00000559481 777 ntBASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AC140878.1-201ENST00000565277 250 ntBASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 SNX18-202ENST00000343017 3140 ntBASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 NFIC-211ENST00000641145 8399 ntBASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMCH1Q9UPQ0 AC140479.7-201ENST00000636301 2332 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC005089.1-201ENST00000619486 2241 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC004449.1-201ENST00000564240 433 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC000095.1-201ENST00000603208 874 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AL844908.2-201ENST00000609461 460 ntBASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMCH1Q9UPQ0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 KRT18P13-201ENST00000400056 1290 ntBASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AC107890.1-201ENST00000422478 521 ntBASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AC092580.3-201ENST00000430932 139 ntBASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMCH1Q9UPQ0 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms