Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.51■□□□□ 0.23
SIX2Q9NPC8 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 VDAC1P7-201ENST00000462417 847 ntBASIC16.5■□□□□ 0.23
SIX2Q9NPC8 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 AL136379.1-201ENST00000623471 2642 ntBASIC16.5■□□□□ 0.23
SIX2Q9NPC8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 AC018442.1-201ENST00000421439 2061 ntBASIC16.5■□□□□ 0.23
SIX2Q9NPC8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SIX2Q9NPC8 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 BRI3BPP1-201ENST00000594224 787 ntBASIC16.49■□□□□ 0.23
SIX2Q9NPC8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 AL009178.2-201ENST00000597278 2719 ntBASIC16.49■□□□□ 0.23
SIX2Q9NPC8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 AL138799.1-201ENST00000448213 1675 ntBASIC16.49■□□□□ 0.23
SIX2Q9NPC8 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SIX2Q9NPC8 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SIX2Q9NPC8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms