Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 Z97205.2-201ENST00000564697 1639 ntBASIC15.97■□□□□ 0.15
PCDH9Q9HC56 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 RNA5SP421-201ENST00000516864 134 ntBASIC15.97■□□□□ 0.15
PCDH9Q9HC56 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 AC044860.1-202ENST00000559481 777 ntBASIC15.97■□□□□ 0.15
PCDH9Q9HC56 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 AL109936.8-201ENST00000641772 604 ntBASIC15.97■□□□□ 0.15
PCDH9Q9HC56 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PCDH9Q9HC56 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 PCDHA3-202ENST00000532566 4594 ntBASIC15.96■□□□□ 0.15
PCDH9Q9HC56 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC074044.1-201ENST00000609673 707 ntBASIC15.96■□□□□ 0.15
PCDH9Q9HC56 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC007191.1-201ENST00000623179 2995 ntBASIC15.96■□□□□ 0.15
PCDH9Q9HC56 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 AC005089.1-201ENST00000619486 2241 ntBASIC15.96■□□□□ 0.15
PCDH9Q9HC56 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.96■□□□□ 0.15
PCDH9Q9HC56 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 AC022144.1-201ENST00000602255 1580 ntBASIC15.96■□□□□ 0.14
PCDH9Q9HC56 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
PCDH9Q9HC56 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AP000845.1-201ENST00000581677 2131 ntBASIC15.95■□□□□ 0.14
PCDH9Q9HC56 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms