Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DRD5P1-201ENST00000456605 1438 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC002472.2-201ENST00000442739 958 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC007216.2-201ENST00000562802 384 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 SAMD11P1-201ENST00000571429 661 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 BRI3BPP1-201ENST00000594224 787 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC004233.3-201ENST00000607794 1269 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC093726.1-201ENST00000608064 963 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AL359258.3-201ENST00000622910 2331 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 AC012508.2-201ENST00000567613 1472 ntBASIC11.94□□□□□ -0.5
CCDC140Q96MF4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CCDC140Q96MF4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 CALY-202ENST00000368555 783 ntTSL 2 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 RPL13AP25-201ENST00000484130 612 ntBASIC11.93□□□□□ -0.5
CCDC140Q96MF4 AC026410.3-201ENST00000514280 936 ntBASIC11.93□□□□□ -0.5
CCDC140Q96MF4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 MIR4745-201ENST00000577608 62 ntBASIC11.93□□□□□ -0.5
CCDC140Q96MF4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 MIR8072-201ENST00000614241 80 ntBASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
CCDC140Q96MF4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms