Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
VMP1Q96GC9 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 CICP23-201ENST00000605013 2741 ntBASIC14.88□□□□□ -0.03
VMP1Q96GC9 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 FAM207CP-201ENST00000443486 507 ntBASIC14.88□□□□□ -0.03
VMP1Q96GC9 UGT1A2P-201ENST00000454886 866 ntBASIC14.88□□□□□ -0.03
VMP1Q96GC9 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 BNIP3P1-202ENST00000550043 1585 ntBASIC14.88□□□□□ -0.03
VMP1Q96GC9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 BTBD7P1-201ENST00000447253 1453 ntBASIC14.88□□□□□ -0.03
VMP1Q96GC9 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VMP1Q96GC9 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.88□□□□□ -0.03
VMP1Q96GC9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AL137784.3-201ENST00000623858 2288 ntBASIC14.87□□□□□ -0.03
VMP1Q96GC9 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 MRPS18AP1-201ENST00000414458 589 ntBASIC14.87□□□□□ -0.03
VMP1Q96GC9 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VMP1Q96GC9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 AC009118.2-201ENST00000613275 655 ntBASIC14.87□□□□□ -0.03
VMP1Q96GC9 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.87□□□□□ -0.03
VMP1Q96GC9 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms