Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 RHOH-217ENST00000610353 2268 ntAPPRIS P1 TSL 4 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AC006504.4-201ENST00000592118 1568 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AL049757.1-201ENST00000616842 1596 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 TMEM136-202ENST00000375095 4143 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 NIFKP9-201ENST00000419265 221 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AC103564.2-201ENST00000432853 1299 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 OR2A1-AS1-207ENST00000486094 819 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 UNC93B4-201ENST00000505679 747 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AC008687.6-201ENST00000596318 630 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 CR769767.2-201ENST00000622735 460 ntBASIC9.56□□□□□ -0.88
LINC00643Q86TS7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 MKL1-205ENST00000407029 4091 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 SLC6A1-201ENST00000287766 4502 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 WSCD2-201ENST00000332082 4710 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC9.56□□□□□ -0.88
LINC00643Q86TS7 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 HNRNPRP1-201ENST00000453465 1695 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 NAV2-204ENST00000396087 7882 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 MKRN5P-201ENST00000445263 1467 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC138969.3-201ENST00000546612 1459 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC138932.2-201ENST00000548268 1459 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 AC126755.4-201ENST00000549796 1459 ntBASIC9.55□□□□□ -0.88
LINC00643Q86TS7 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC9.55□□□□□ -0.88
LINC00643Q86TS7 GXYLT1P4-201ENST00000613576 1192 ntBASIC9.55□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms