Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 MIR3677-201ENST00000578964 60 ntBASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 Z98259.2-201ENST00000641583 609 ntBASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 AC055811.4-201ENST00000624039 1754 ntBASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 AC103691.2-201ENST00000618824 433 ntBASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC88AQ3V6T2 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AP005117.1-202ENST00000581724 1908 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 ISCA2P1-201ENST00000425548 448 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 NDUFS6P1-201ENST00000485187 316 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 MIR4754-201ENST00000582477 89 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC005962.1-201ENST00000584100 773 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AL136301.1-201ENST00000615830 422 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC079328.2-201ENST00000561241 3354 ntBASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC88AQ3V6T2 AC090616.6-203ENST00000579186 1945 ntBASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms