Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PHF23-213ENST00000613632 850 ntTSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 AC006058.4-201ENST00000624016 1670 ntBASIC10.76□□□□□ -0.69
PRKDCP78527 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 RPS23-204ENST00000507980 836 ntTSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC10.76□□□□□ -0.69
PRKDCP78527 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
PRKDCP78527 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
PRKDCP78527 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
PRKDCP78527 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 AC012508.2-201ENST00000567613 1472 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MBP-201ENST00000354542 575 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 AL356000.1-201ENST00000441073 1238 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 AL451000.1-201ENST00000451300 1186 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC10.75□□□□□ -0.69
PRKDCP78527 AC138701.2-201ENST00000553634 226 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 AC007326.1-201ENST00000604539 458 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 AC012313.1-201ENST00000593393 3059 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 AL137783.1-201ENST00000623494 1896 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
PRKDCP78527 FBXO36P1-201ENST00000579006 471 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 ME2P1-201ENST00000426028 1970 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC10.75□□□□□ -0.69
PRKDCP78527 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 EEF1DP7-201ENST00000580496 513 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC10.75□□□□□ -0.69
PRKDCP78527 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC10.75□□□□□ -0.69
PRKDCP78527 AL450487.2-201ENST00000615934 407 ntBASIC10.75□□□□□ -0.69
PRKDCP78527 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC10.75□□□□□ -0.69
PRKDCP78527 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
PRKDCP78527 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
PRKDCP78527 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
PRKDCP78527 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC10.74□□□□□ -0.69
PRKDCP78527 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC10.74□□□□□ -0.69
PRKDCP78527 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC10.74□□□□□ -0.69
PRKDCP78527 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC10.74□□□□□ -0.69
PRKDCP78527 MIEF1-215ENST00000637854 213 ntBASIC10.74□□□□□ -0.69
PRKDCP78527 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms