Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 AC087386.2-201ENST00000623212 4637 ntBASIC13.67□□□□□ -0.22
SOX2P48431 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 AZGP1P1-201ENST00000411909 902 ntBASIC13.67□□□□□ -0.22
SOX2P48431 EEF1DP4-201ENST00000446006 880 ntBASIC13.67□□□□□ -0.22
SOX2P48431 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.67□□□□□ -0.22
SOX2P48431 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.67□□□□□ -0.22
SOX2P48431 AP000842.3-202ENST00000569238 1080 ntBASIC13.67□□□□□ -0.22
SOX2P48431 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.67□□□□□ -0.22
SOX2P48431 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SOX2P48431 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
SOX2P48431 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SOX2P48431 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 CICP4-201ENST00000447359 2812 ntBASIC13.67□□□□□ -0.22
SOX2P48431 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX2P48431 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX2P48431 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.66□□□□□ -0.22
SOX2P48431 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 PP7080-204ENST00000510714 601 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX2P48431 RNA5SP416-201ENST00000516838 111 ntBASIC13.66□□□□□ -0.22
SOX2P48431 IGHV3-62-201ENST00000520057 340 ntBASIC13.66□□□□□ -0.22
SOX2P48431 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX2P48431 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.66□□□□□ -0.22
SOX2P48431 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX2P48431 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 WASH3P-207ENST00000560956 1394 ntBASIC13.66□□□□□ -0.22
SOX2P48431 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 FO538757.1-201ENST00000623083 1397 ntBASIC13.66□□□□□ -0.22
SOX2P48431 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX2P48431 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX2P48431 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX2P48431 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SOX2P48431 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
SOX2P48431 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms