Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CROCCP4-201ENST00000457096 498 ntBASIC17.3■□□□□ 0.36
CIITAP33076 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.3■□□□□ 0.36
CIITAP33076 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.3■□□□□ 0.36
CIITAP33076 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.3■□□□□ 0.36
CIITAP33076 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CIITAP33076 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CIITAP33076 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CIITAP33076 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CIITAP33076 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CIITAP33076 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 WASH3P-207ENST00000560956 1394 ntBASIC17.29■□□□□ 0.36
CIITAP33076 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.29■□□□□ 0.36
CIITAP33076 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 REXO1L5P-201ENST00000622260 2098 ntBASIC17.29■□□□□ 0.36
CIITAP33076 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.29■□□□□ 0.36
CIITAP33076 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CIITAP33076 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 FTH1P14-201ENST00000482930 551 ntBASIC17.29■□□□□ 0.36
CIITAP33076 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.29■□□□□ 0.36
CIITAP33076 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.29■□□□□ 0.36
CIITAP33076 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 AC025279.2-201ENST00000569730 653 ntBASIC17.29■□□□□ 0.36
CIITAP33076 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.29■□□□□ 0.36
CIITAP33076 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 AC006486.2-201ENST00000624246 2199 ntBASIC17.29■□□□□ 0.36
CIITAP33076 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.29■□□□□ 0.36
CIITAP33076 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.29■□□□□ 0.36
CIITAP33076 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CIITAP33076 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.28■□□□□ 0.36
CIITAP33076 AC126177.1-201ENST00000547829 2218 ntBASIC17.28■□□□□ 0.36
CIITAP33076 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CIITAP33076 GK-202ENST00000378941 458 ntTSL 3 BASIC17.28■□□□□ 0.36
CIITAP33076 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CIITAP33076 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.28■□□□□ 0.36
CIITAP33076 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.28■□□□□ 0.36
CIITAP33076 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 AC022616.1-201ENST00000518688 554 ntBASIC17.28■□□□□ 0.36
CIITAP33076 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 HILS1-202ENST00000545329 423 ntBASIC17.28■□□□□ 0.36
CIITAP33076 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 AC132938.4-201ENST00000623835 848 ntBASIC17.28■□□□□ 0.36
CIITAP33076 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CIITAP33076 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.28■□□□□ 0.36
CIITAP33076 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
CIITAP33076 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms