Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
COL8A1P27658 REXO1L1P-202ENST00000608646 1974 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 AL603756.1-201ENST00000606511 2163 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL8A1P27658 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.47□□□□□ -0.25
COL8A1P27658 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC13.47□□□□□ -0.25
COL8A1P27658 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 AL390728.6-201ENST00000566446 1246 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC13.47□□□□□ -0.25
COL8A1P27658 AC012044.1-201ENST00000603431 297 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 AC025181.2-201ENST00000606994 802 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
COL8A1P27658 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
COL8A1P27658 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.47□□□□□ -0.25
COL8A1P27658 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 NORAD-201ENST00000565493 5339 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.47□□□□□ -0.25
COL8A1P27658 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.47□□□□□ -0.25
COL8A1P27658 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.46□□□□□ -0.25
COL8A1P27658 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL8A1P27658 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL8A1P27658 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.46□□□□□ -0.25
COL8A1P27658 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 AC011742.3-201ENST00000439053 820 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 NOC2LP1-201ENST00000450578 752 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 PHKG1P2-201ENST00000457537 863 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC13.46□□□□□ -0.25
COL8A1P27658 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.46□□□□□ -0.25
COL8A1P27658 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 PPY2P-201ENST00000582808 702 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.46□□□□□ -0.25
COL8A1P27658 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 AC087045.2-201ENST00000606279 1003 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.46□□□□□ -0.25
COL8A1P27658 MIR6756-201ENST00000616240 63 ntBASIC13.46□□□□□ -0.25
COL8A1P27658 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
COL8A1P27658 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.46□□□□□ -0.25
COL8A1P27658 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.46□□□□□ -0.25
COL8A1P27658 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.46□□□□□ -0.25
COL8A1P27658 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.46□□□□□ -0.25
COL8A1P27658 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL8A1P27658 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.46□□□□□ -0.26
COL8A1P27658 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms