Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC011477.6-201ENST00000604980 1927 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
COL9A1P20849 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC15.73■□□□□ 0.11
COL9A1P20849 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.73■□□□□ 0.11
COL9A1P20849 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC15.73■□□□□ 0.11
COL9A1P20849 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 IGKV1OR-2-201ENST00000457995 350 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 AC021723.1-201ENST00000486306 515 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.73■□□□□ 0.11
COL9A1P20849 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC15.73■□□□□ 0.11
COL9A1P20849 FOS-204ENST00000554617 796 ntTSL 2 BASIC15.73■□□□□ 0.11
COL9A1P20849 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.73■□□□□ 0.11
COL9A1P20849 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.73■□□□□ 0.11
COL9A1P20849 ELP5-212ENST00000574255 671 ntTSL 2 BASIC15.73■□□□□ 0.11
COL9A1P20849 AC093813.1-201ENST00000605066 256 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 AC048344.4-201ENST00000619744 527 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 AL512356.3-201ENST00000623005 461 ntBASIC15.73■□□□□ 0.11
COL9A1P20849 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.73■□□□□ 0.11
COL9A1P20849 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL9A1P20849 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.72■□□□□ 0.11
COL9A1P20849 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
COL9A1P20849 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
COL9A1P20849 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
COL9A1P20849 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
COL9A1P20849 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
COL9A1P20849 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.72■□□□□ 0.11
COL9A1P20849 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
COL9A1P20849 RN7SKP199-201ENST00000410325 305 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 KRT17P4-201ENST00000429445 819 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC15.72■□□□□ 0.11
COL9A1P20849 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.72■□□□□ 0.11
COL9A1P20849 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 GAPDHP40-201ENST00000505218 1006 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.72■□□□□ 0.11
COL9A1P20849 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC15.72■□□□□ 0.11
COL9A1P20849 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.72■□□□□ 0.11
COL9A1P20849 AC022148.2-201ENST00000586176 560 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 AC138894.2-201ENST00000602838 371 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 ECM1P1-201ENST00000604092 1279 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 AC007881.3-201ENST00000608897 607 ntBASIC15.72■□□□□ 0.11
COL9A1P20849 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC15.72■□□□□ 0.11
COL9A1P20849 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.72■□□□□ 0.11
COL9A1P20849 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
COL9A1P20849 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL9A1P20849 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.71■□□□□ 0.11
COL9A1P20849 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL9A1P20849 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 COX20P1-201ENST00000366529 357 ntBASIC15.71■□□□□ 0.11
COL9A1P20849 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 AREG-202ENST00000502307 956 ntTSL 5 BASIC15.71■□□□□ 0.11
COL9A1P20849 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
COL9A1P20849 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC15.71■□□□□ 0.11
COL9A1P20849 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
COL9A1P20849 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.71■□□□□ 0.11
COL9A1P20849 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
COL9A1P20849 AL023803.2-201ENST00000620080 638 ntBASIC15.71■□□□□ 0.11
COL9A1P20849 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC15.71■□□□□ 0.11
COL9A1P20849 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL9A1P20849 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL9A1P20849 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.71■□□□□ 0.11
COL9A1P20849 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.71■□□□□ 0.11
COL9A1P20849 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms