Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.85■□□□□ 0.13
HMGA1P17096 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HMGA1P17096 AC018735.1-201ENST00000437208 1502 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGA1P17096 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 MIR663B-201ENST00000408361 115 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 CHMP1AP1-201ENST00000445563 662 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.84■□□□□ 0.13
HMGA1P17096 KRT8P13-201ENST00000463294 1010 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 FTLP10-202ENST00000505798 471 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.84■□□□□ 0.13
HMGA1P17096 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.84■□□□□ 0.13
HMGA1P17096 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
HMGA1P17096 AC103810.3-201ENST00000583567 96 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGA1P17096 ZACNP1-201ENST00000612259 710 ntBASIC15.84■□□□□ 0.13
HMGA1P17096 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.84■□□□□ 0.13
HMGA1P17096 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HMGA1P17096 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.84■□□□□ 0.13
HMGA1P17096 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.84■□□□□ 0.13
HMGA1P17096 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HMGA1P17096 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HMGA1P17096 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
HMGA1P17096 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.83■□□□□ 0.13
HMGA1P17096 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.83■□□□□ 0.13
HMGA1P17096 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGA1P17096 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGA1P17096 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGA1P17096 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGA1P17096 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.83■□□□□ 0.12
HMGA1P17096 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGA1P17096 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.83■□□□□ 0.12
HMGA1P17096 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGA1P17096 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGA1P17096 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HMGA1P17096 KRT8P4-201ENST00000509735 1454 ntBASIC15.83■□□□□ 0.12
HMGA1P17096 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGA1P17096 AC136621.1-201ENST00000624017 2304 ntBASIC15.83■□□□□ 0.12
HMGA1P17096 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.83■□□□□ 0.12
HMGA1P17096 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HMGA1P17096 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.83■□□□□ 0.12
HMGA1P17096 C18orf15-201ENST00000623680 2534 ntBASIC15.83■□□□□ 0.12
HMGA1P17096 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.82■□□□□ 0.12
HMGA1P17096 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.82■□□□□ 0.12
HMGA1P17096 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HMGA1P17096 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms