Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.3■□□□□ 0.2
KRT3P12035 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.3■□□□□ 0.2
KRT3P12035 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.3■□□□□ 0.2
KRT3P12035 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 AC104794.3-201ENST00000566840 1248 ntBASIC16.3■□□□□ 0.2
KRT3P12035 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 AC027796.2-201ENST00000575326 344 ntBASIC16.3■□□□□ 0.2
KRT3P12035 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.3■□□□□ 0.2
KRT3P12035 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
KRT3P12035 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.3■□□□□ 0.2
KRT3P12035 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.3■□□□□ 0.2
KRT3P12035 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.3■□□□□ 0.2
KRT3P12035 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
KRT3P12035 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
KRT3P12035 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
KRT3P12035 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
KRT3P12035 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.29■□□□□ 0.2
KRT3P12035 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.29■□□□□ 0.2
KRT3P12035 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.29■□□□□ 0.2
KRT3P12035 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 INGX-202ENST00000489074 768 ntBASIC16.29■□□□□ 0.2
KRT3P12035 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.29■□□□□ 0.2
KRT3P12035 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.29■□□□□ 0.2
KRT3P12035 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.29■□□□□ 0.2
KRT3P12035 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.29■□□□□ 0.2
KRT3P12035 AL645728.2-202ENST00000641679 227 ntBASIC16.29■□□□□ 0.2
KRT3P12035 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.29■□□□□ 0.2
KRT3P12035 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.29■□□□□ 0.2
KRT3P12035 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.29■□□□□ 0.2
KRT3P12035 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
KRT3P12035 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
KRT3P12035 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
KRT3P12035 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.28■□□□□ 0.2
KRT3P12035 GHSR-202ENST00000427970 912 ntBASIC16.28■□□□□ 0.2
KRT3P12035 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.28■□□□□ 0.2
KRT3P12035 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.28■□□□□ 0.2
KRT3P12035 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.28■□□□□ 0.2
KRT3P12035 AL391069.4-201ENST00000609583 481 ntBASIC16.28■□□□□ 0.2
KRT3P12035 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.28■□□□□ 0.2
KRT3P12035 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.28■□□□□ 0.2
KRT3P12035 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
KRT3P12035 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms