Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DOAP06340 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
HLA-DOAP06340 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.09■□□□□ 0.49
HLA-DOAP06340 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DOAP06340 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DOAP06340 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DOAP06340 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.08■□□□□ 0.49
HLA-DOAP06340 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
HLA-DOAP06340 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HLA-DOAP06340 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.08■□□□□ 0.49
HLA-DOAP06340 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.08■□□□□ 0.49
HLA-DOAP06340 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 AC104457.1-201ENST00000401024 814 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 BTBD6P1-201ENST00000412176 1267 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 GOLGA2P4-201ENST00000441462 777 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 HOMER2P2-201ENST00000451621 847 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 EEF1DP1-201ENST00000585891 896 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 DOC2GP-204ENST00000639052 2548 ntBASIC18.08■□□□□ 0.48
HLA-DOAP06340 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.08■□□□□ 0.48
HLA-DOAP06340 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HLA-DOAP06340 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 FAM8A4P-201ENST00000435433 1213 ntBASIC18.07■□□□□ 0.48
HLA-DOAP06340 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 PCDHA1-201ENST00000378133 2726 ntBASIC18.07■□□□□ 0.48
HLA-DOAP06340 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
HLA-DOAP06340 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HLA-DOAP06340 AL365203.3-201ENST00000609742 2057 ntBASIC18.07■□□□□ 0.48
HLA-DOAP06340 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.06■□□□□ 0.48
HLA-DOAP06340 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HLA-DOAP06340 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms