Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 AC055811.4-201ENST00000624039 1754 ntBASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.35■□□□□ 0.21
PAAF1Q9BRP4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 AC022616.1-201ENST00000518688 554 ntBASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 AC005695.3-201ENST00000614522 232 ntBASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.34■□□□□ 0.21
PAAF1Q9BRP4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
PAAF1Q9BRP4 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 AC245100.3-201ENST00000441281 285 ntBASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 REXO1L4P-201ENST00000605109 1937 ntBASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 AC136621.1-201ENST00000624017 2304 ntBASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PAAF1Q9BRP4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PAAF1Q9BRP4 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms