Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.67■□□□□ 0.42
USP28Q96RU2 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.67■□□□□ 0.42
USP28Q96RU2 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.67■□□□□ 0.42
USP28Q96RU2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC140878.1-201ENST00000565277 250 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
USP28Q96RU2 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
USP28Q96RU2 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC138969.3-201ENST00000546612 1459 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 AC138932.2-201ENST00000548268 1459 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 AC126755.4-201ENST00000549796 1459 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC087499.5-201ENST00000452760 1342 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP28Q96RU2 AC005089.1-201ENST00000619486 2241 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 MTHFR-210ENST00000641407 2387 ntBASIC17.66■□□□□ 0.42
USP28Q96RU2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC107890.1-201ENST00000422478 521 ntBASIC17.66■□□□□ 0.42
USP28Q96RU2 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.66■□□□□ 0.42
USP28Q96RU2 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.66■□□□□ 0.42
USP28Q96RU2 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
USP28Q96RU2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC004449.1-201ENST00000564240 433 ntBASIC17.66■□□□□ 0.42
USP28Q96RU2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.66■□□□□ 0.42
USP28Q96RU2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC012508.2-201ENST00000567613 1472 ntBASIC17.66■□□□□ 0.42
USP28Q96RU2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 AC018529.2-202ENST00000611482 3087 ntBASIC17.66■□□□□ 0.42
USP28Q96RU2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
USP28Q96RU2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP28Q96RU2 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.66■□□□□ 0.42
USP28Q96RU2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.65■□□□□ 0.42
USP28Q96RU2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP28Q96RU2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC097493.3-201ENST00000509725 367 ntBASIC17.65■□□□□ 0.42
USP28Q96RU2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.65■□□□□ 0.42
USP28Q96RU2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC000095.1-201ENST00000603208 874 ntBASIC17.65■□□□□ 0.42
USP28Q96RU2 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.65■□□□□ 0.42
USP28Q96RU2 AC093028.1-201ENST00000622998 982 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms