Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHMP4CQ96CF2 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AC013268.4-201ENST00000637413 2228 ntBASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 MEIS3P1-201ENST00000495167 958 ntBASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 Z97205.2-201ENST00000564697 1639 ntBASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CHMP4CQ96CF2 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 GAPDHP21-201ENST00000450301 1010 ntBASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 RN7SL752P-201ENST00000463779 287 ntBASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AC055876.2-201ENST00000531834 546 ntBASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 AC063926.2-201ENST00000623766 1308 ntBASIC18.47■□□□□ 0.55
CHMP4CQ96CF2 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 TK2-221ENST00000620035 5060 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 RPL13P2-201ENST00000440687 659 ntBASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 IGHV3-72-202ENST00000621503 303 ntBASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4CQ96CF2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CHMP4CQ96CF2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms