Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.33■□□□□ 0.53
CTR9Q6PD62 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 ANKRD19P-201ENST00000338192 862 ntBASIC18.33■□□□□ 0.52
CTR9Q6PD62 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 AC119751.2-201ENST00000504529 210 ntBASIC18.33■□□□□ 0.52
CTR9Q6PD62 AC106760.1-201ENST00000508690 800 ntBASIC18.33■□□□□ 0.52
CTR9Q6PD62 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 BX539320.1-201ENST00000623759 877 ntBASIC18.33■□□□□ 0.52
CTR9Q6PD62 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 AC132872.4-202ENST00000622924 2756 ntBASIC18.33■□□□□ 0.52
CTR9Q6PD62 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.33■□□□□ 0.52
CTR9Q6PD62 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTR9Q6PD62 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC093525.8-201ENST00000624099 1342 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 RPL5P21-201ENST00000404620 815 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC244107.1-201ENST00000442033 332 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 MIR4259-201ENST00000584466 101 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 AC017083.2-201ENST00000608069 979 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 AL022328.1-201ENST00000610050 478 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 AP005019.2-201ENST00000615104 511 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 MIR6775-201ENST00000617557 69 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 AL645728.2-202ENST00000641679 227 ntBASIC18.32■□□□□ 0.52
CTR9Q6PD62 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.32■□□□□ 0.52
CTR9Q6PD62 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTR9Q6PD62 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 AC007787.1-201ENST00000588095 1583 ntBASIC18.31■□□□□ 0.52
CTR9Q6PD62 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTR9Q6PD62 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CTR9Q6PD62 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms